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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs11951859 chr5:92747736 T/C 4.15E-6 403 15.05 17.13 19.2 KM Plot
LGG rs11952115 chr5:92882912 C/T 0.000133 402 15.17 16.17 17.93 KM Plot
LGG rs11952600 chr5:92819193 A/G 1.08E-5 406 14.93 17.07 18.57 KM Plot
LGG rs11953051 chr5:156031320 A/C 2.6E-5 407 16.67 14.43 11.17 KM Plot
LGG rs11954736 chr5:167760730 T/C 3.18E-8 397 15.33 15.27 16.82 KM Plot
LGG rs11959119 chr5:92937146 A/T 3.42E-7 407 19.23 15.43 15.17 KM Plot
LGG rs11960608 chr5:92872156 C/T 0.000111 405 14.93 17.07 17.93 KM Plot
LGG rs11966295 chr6:97588441 T/C 0.000118 404 15.17 21.8 6.43 KM Plot
LGG rs11966316 chr6:97588710 C/T 0.00011 407 6.43 19.27 15.18 KM Plot
LGG rs11966717 chr6:33611339 C/T 1.78E-8 403 15.47 14.83 6.63 KM Plot
LGG rs11969604 chr6:170187851 C/T 0.000104 407 5.9 16.73 15.27 KM Plot
LGG rs11978313 chr7:39522614 C/T 9.15E-10 407 6.47 14.93 15.73 KM Plot
LGG rs11999643 chr9:126946767 T/G 1.7E-6 405 15.37 11.1 12.92 KM Plot
LGG rs12002460 chr9:94633912 C/T 6.99E-5 407 15.18 16.47 17.55 KM Plot
LGG rs12002884 chr9:94631376 A/G 6.99E-5 407 15.18 16.47 17.55 KM Plot